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clade
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{{short description|A group of organisms that consists of a common ancestor and all its lineal descendants}}{{other uses}}{{Use dmy dates|date=July 2012}}File:Clade-grade II.svg|thumb|400px|Cladogram (family tree) of a biological group, showing the last common ancestor of the composite tree, which is the vertical line 'trunk' (stem) at the bottom, with all descendant branches shown above. The blue and red subgroups (at left and right) are clades, or monophyletic (complete) groups; each shows its common ancestor 'stem' at the bottom of the subgroup 'branch'. The green subgroup is not a clade; it is a paraphyleticparaphyleticA clade (from }}, klados, "branch"), also known as monophyletic group, is a group of organisms that consists of a common ancestor and all its lineal descendants, and represents a single "branch" on the "tree of life".BOOK, Assembling the Tree of Life, Joel, Cracraft, Michael J., Donoghue, Introduction, 1, Oxford University Press, 2004, 978-0-19-972960-9, The common ancestor may be an individual, a population, a species (extinct or extant), and so on right up to a kingdom and further. Clades are nested, one in another, as each branch in turn splits into smaller branches. These splits reflect evolutionary history as populations diverged and evolved independently. Clades are termed monophyletic (Greek: "one clan") groups.Over the last few decades, the cladistic approach has revolutionized biological classification and revealed surprising evolutionary relationships among organisms.BOOK, Evolution: The Story of Life, Palmer, Douglas, University of California Press, 2009, Berkeley, 13, Increasingly, taxonomists try to avoid naming taxa that are not clades; that is, taxa that are not monophyletic. Some of the relationships between organisms that the molecular biology arm of cladistics has revealed are that fungi are closer relatives to animals than they are to plants, archaea are now considered different from bacteria, and multicellular organisms may have evolved from archaea.JOURNAL, Pace, Norman R., 2006-05-18, Time for a change, Nature, 441, 7091, 289, 2006Natur.441..289P, 10.1038/441289a, 1476-4687, 16710401,

Etymology

The term "clade" was coined in 1957 by the biologist Julian Huxley to refer to the result of cladogenesis, a concept Huxley borrowed from Bernhard Rensch.JOURNAL, Dupuis, Claude, 1984, Willi Hennig's impact on taxonomic thought, Annual Review of Ecology and Systematics, 15, 1–24, 10.1146/annurev.es.15.110184.000245, JOURNAL, Huxley, J. S., 1957, The three types of evolutionary process, Nature, 180, 4584, 454–455, 10.1038/180454a0, 1957Natur.180..454H, Many commonly named groups, rodents and insects for example, are clades because, in each case, the group consists of a common ancestor with all its descendant branches. Rodents, for example, are a branch of mammals that split off after the end of the period when the clade Dinosauria stopped being the dominant terrestrial vertebrates 66 million years ago. The original population and all its descendants are a clade. The rodent clade corresponds to the order Rodentia, and insects to the class Insecta. These clades include smaller clades, such as chipmunk or ant, each of which consists of even smaller clades. The clade "rodent" is in turn included in the mammal, vertebrate and animal clades.

History of nomenclature and taxonomy

File:Haeckel arbol bn.png|thumb|right|Early phylogenetic tree by Haeckel, 1866. Groups once thought to be more advanced, such as birds ("Aves"), are placed at the top.]]The idea of a clade did not exist in pre-Darwinian Linnaean taxonomy, which was based by necessity only on internal or external morphological similarities between organisms – although as it happens, many of the better known animal groups in Linnaeus' original Systema Naturae (notably among the vertebrate groups) do represent clades. The phenomenon of convergent evolution is, however, responsible for many cases where there are misleading similarities in the morphology of groups that evolved from different lineages.With the increasing realization in the first half of the 19th century that species had changed and split through the ages, classification increasingly came to be seen as branches on the evolutionary tree of life. The publication of Darwin's theory of evolution in 1859 gave this view increasing weight. Thomas Henry Huxley, an early advocate of evolutionary theory, proposed a revised taxonomy based on clades.Huxley, T.H. (1876): Lectures on Evolution. New York Tribune. Extra. no 36. In Collected Essays IV: pp 46-138 original text w/ figures For example, he grouped birds with reptiles, based on fossil evidence.German biologist Emil Hans Willi Hennig (1913 – 1976) is considered to be the founder of cladistics.JOURNAL, Brower, Andrew V. Z., 2013, Willi Hennig at 100, Cladistics, 30, 2, 224–225, 10.1111/cla.12057, He proposed a classification system that represented repeated branchings of the family tree, as opposed to the previous systems, which put organisms on a "ladder", with supposedly more "advanced" organisms at the top.”Evolution 101.” page 10. Understanding Evolution website. University of California, Berkeley. Retrieved 26 February 2016.Taxonomists have increasingly worked to make the taxonomic system reflect evolution. When it comes to naming, however, this principle is not always compatible with the traditional rank-based nomenclature. In the latter, only taxa associated with a rank can be named, yet there are not enough ranks to name a long series of nested clades. For these and other reasons, phylogenetic nomenclature has been developed; it is still controversial.

Definitions

File:Cladogram Crocodilia NL.PNG|thumb|right|Gavialidae, Crocodylidae and Alligatoridae are clade names that are here applied to a phylogenetic tree of crocodylians.]]A clade is by definition monophyletic, meaning that it contains one ancestor (which can be an organism, a population, or a species) and all its descendants.A semantic case has been made that the name should be "holophyletic", but this term has not acquired widespread use. For more information, see holophyly.WEB, International Code of Phylogenetic Nomenclature. Version 4c. Chapter I. Taxa.,weblink 2010, 22 September 2012, JOURNAL
, 10.1111/j.1095-8312.2008.00984.x
, On the difference between mono-, holo-, and paraphyletic groups: a consistent distinction of process and pattern
, 2008
, Envall
, Mats
, Biological Journal of the Linnean Society
, 94
, 217, The ancestor can be known or unknown; any and all members of a clade can be extant or extinct.

Clades and phylogenetic trees

The science that tries to reconstruct phylogenetic trees and thus discover clades is called phylogenetics or cladistics, the latter term coined by Ernst Mayr (1965), derived from "clade". The results of phylogenetic/cladistic analyses are tree-shaped diagrams called cladograms; they, and all their branches, are phylogenetic hypotheses.JOURNAL, Nixon, Kevin C., Carpenter, James M., On the Other "Phylogenetic Systematics", Cladistics, 1 September 2000, 16, 3, 298–318, 10.1111/j.1096-0031.2000.tb00285.x, Three methods of defining clades are featured in phylogenetic nomenclature: node-, stem-, and apomorphy-based (see here for detailed definitions).

Terminology

(File:Primate cladogram.svg|thumb|300px|Cladogram of modern primate groups; all tarsiers are haplorhines, but not all haplorhines are tarsiers; all apes are catarrhines, but not all catarrhines are apes; etc.)The relationship between clades can be described in several ways:
  • A clade located within a clade is said to be nested within that clade. In the diagram, the hominoid clade, i.e. the apes and humans, is nested within the primate clade.
  • Two clades are sisters if they have an immediate common ancestor. In the diagram, lemurs and lorises are sister clades, while humans and tarsiers are not.
  • A clade A is basal to a clade B if A branches off the lineage leading to B before the first branch leading only to members of B. In the adjacent diagram, the strepsirrhine/prosimian clade, is basal to the hominoids/ape clade. However, in this example, both Haplorrhine as prosimians should be considered as most basal groupings. It is better to say that the prosimians are the sister group to the rest of the primates.JOURNAL, Krell, F.-T., Cranston, P., 2004, Which side of the tree is more basal?, Systematic Entomology, 29, 3, 279–281, 10.1111/j.0307-6970.2004.00262.x, yes, This way one also avoids unintended and misconceived connotations about evolutionary advancement, complexity, diversity, ancestor status, and ancienity e.g. due to impact of sampling diversity and extinction.{{citation needed|reason=reads as editorial comment|date=March 2019}}WEB,weblink For the love of trees: The ancestors are not among us, Smith, Stacey, 2016-09-19, For the love of trees, 2019-03-23, Basal clades should not be confused with stem groupings, as the latter is associated with paraphyletic or unresolved groupings.

In popular culture

Clade is the title of a novel by James Bradley, who chose it both because of its biological meaning and also because of the larger implications of the word.WEB,weblink Choosing the Book title 'Clade', Penguin Group Australia, 2015, 20 January 2015, An episode of Elementary was titled "Dead Clade Walking" and dealt with a case involving a rare fossil.

See also

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Notes

References

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External links

{{wiktionary}} {{Phylogenetics}}{{Evolution}}

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