SUPPORT THE WORK

GetWiki

Acidobacteria

ARTICLE SUBJECTS
aesthetics  →
being  →
complexity  →
database  →
enterprise  →
ethics  →
fiction  →
history  →
internet  →
knowledge  →
language  →
licensing  →
linux  →
logic  →
method  →
news  →
perception  →
philosophy  →
policy  →
purpose  →
religion  →
science  →
sociology  →
software  →
truth  →
unix  →
wiki  →
ARTICLE TYPES
essay  →
feed  →
help  →
system  →
wiki  →
ARTICLE ORIGINS
critical  →
discussion  →
forked  →
imported  →
original  →
Acidobacteria
[ temporary import ]
please note:
- the content below is remote from Wikipedia
- it has been imported raw for GetWiki
{{Taxobox| name = Acidobacteria| image = Acidobacterium.jpg| image_caption = Acidobacterium| domain = Bacteria| phylum = Acidobacteria
YEAR = 2012 DOI = 10.1099/IJS.0.68147-0 VOLUME = 62 PAGES = 1–4, | subdivision_ranks = Class| subdivision = AcidobacteriaBlastocatelliaHolophagae}}Acidobacteria is a phylum of bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.JOURNAL, Barns SM, Cain EC, Sommerville L, Kuske CR, Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum, Appl. Environ. Microbiol., 73, 9, 3113–6, 2007, 17337544, 10.1128/AEM.02012-06, 1892891, JOURNAL, Quaiser A, Ochsenreiter T, Lanz C, Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics, Mol. Microbiol., 50, 2, 563–75, 2003, 14617179, 10.1046/j.1365-2958.2003.03707.x, etal, RAPPE > FIRST1 = M. S. FIRST2 = S. J., The Uncultured Microbial Majority, Annual Review of Microbiology, 57, 369–394, 2003, 14527284, 10.1146/annurev.micro.57.030502.090759,

Description

Members of this phylum are physiologically diverse, and can be found in a variety of environments including soil, hot springs, oceans, caves, and metal-contaminated soils.BOOK, Bergey's Manual of Systematics of Archaea and Bacteria, 1–5, Acidobacteria phyl. nov., 2015, 10.1002/9781118960608.pbm00001, Thrash JC, Coates JD, Whitman WB, John Wiley & Sons, 9781118960608, Many Acidobacteria are acidophilic, including the first described member of the phylum, Acidobacterium capsulatum.JOURNAL, Kuske CR, Barns SM, Busch JD, Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions, Appl. Environ. Microbiol., 63, 9, 3614–21, 1 September 1997, 9293013, 168668, Other notable species are Holophaga foetida,JOURNAL, Liesack, Werner, Bak, Friedhelm, Kreft, Jan-Ulrich, Stackebrandt, E., Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds, Archives of Microbiology, 30 June 1994, 162, 1–2, 85–90, 10.1007/BF00264378, 8085918, Geothrix fermentans,JOURNAL, Coates, J. D., Ellis, D. J., Gaw, C. V., Lovley, D. R., Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer, International Journal of Systematic Bacteriology, 1 October 1999, 49, 4, 1615–1622, 10.1099/00207713-49-4-1615, 10555343, Acanthopleuribacter pedisJOURNAL, Fukunaga, Y, Kurahashi, M, Yanagi, K, Yokota, A, Harayama, S, Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria', International Journal of Systematic and Evolutionary Microbiology, November 2008, 58, Pt 11, 2597–2601, 10.1099/ijs.0.65589-0, 18984699, and Bryobacter aggregatus.JOURNAL, Kulichevskaya, IS, Suzina, NE, Liesack, W, Dedysh, SN, Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria, International Journal of Systematic and Evolutionary Microbiology, February 2010, 60, Pt 2, 301–6, 10.1099/ijs.0.013250-0, 19651730, Since they have only recently been discovered and the large majority have not been cultured, the ecology and metabolism of these bacteria is not well understood. However, these bacteria may be an important contributor to ecosystems, since they are particularly abundant within soils.JOURNAL, Eichorst SA, Breznak JA, Schmidt TM, Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria, Appl. Environ. Microbiol., 73, 8, 2708–17, 2007, 17293520, 10.1128/AEM.02140-06, 1855589, As well as their natural soil habitat, unclassified subdivision 2 Acidobacteria have also been identified as a contaminant of DNA extraction kit reagents, which may lead to their erroneous appearance in microbiota or metagenomic datasets.JOURNAL, Salter, Susannah J., Cox, Michael J., Turek, Elena M., Calus, Szymon T., Cookson, William O., Moffatt, Miriam F., Turner, Paul, Parkhill, Julian, Loman, Nicholas J., 2014-01-01, Reagent and laboratory contamination can critically impact sequence-based microbiome analyses, BMC Biology, 12, 87, 10.1186/s12915-014-0087-z, 1741-7007, 4228153, 25387460, The G+C content of Acidobacteria genomes are consistent within their subdivisions - above 60% for group V fragments and roughly 10% lower for group III fragments.JOURNAL, Quaiser A, Ochsenreiter T, Lanz C, Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics, Mol. Microbiol., 50, 2, 563–75, 2003, 14617179, 10.1046/j.1365-2958.2003.03707.x, etal,

History

The first species, Acidobacterium capsulatum, of this phylum was discovered in 1991.JOURNAL, Kishimoto, Noriaki, Kosako, Yoshimasa, Tano, Tatsuo, Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment, Current Microbiology, 31 December 1990, 22, 1, 1–7, 10.1007/BF02106205, However, Acidobacteria were not recognized as a novel division until 1997, and were not recognized as a phylum until 2012.WEB,weblink Taxa above the rank of class - Acidobacteria, LPSN, Euzeby JP, 26 November 2017,

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)See the List of Prokaryotic names with Standing in Nomenclature. Data extracted from WEB, J.P. Euzéby,weblink Acidobacteria, 2016-09-09, yes,weblink" title="web.archive.org/web/20130127030659weblink">weblink 2013-01-27, See the NCBI webpage on Chlorobi Data extracted from WEB, Sayers,weblink NCBI Taxonomy Browser, National Center for Biotechnology Information, 2016-09-09, etal, and the phylogeny is based on 16S rRNA-based LTP release 123 by The All-Species Living Tree Project.See the All-Species Living Tree Project weblink. Data extracted from the WEB,weblink 16S rRNA-based LTP release 123 (full tree), Silva Comprehensive Ribosomal RNA Database, 2016-09-09, {{Clade| style=font-size:100%;line-height:80%|1={{clade
|label1=Holophagae
|1={{clade
|label1=Acanthopleuribacteraceae
|1=Acanthopleuribacter pedis Fukunaga et al. 2008
|label2=Holophagaceae
|2={{clade
|1=Geothrix fermentans Coates et al. 1999
|2=Holophaga foetida Liesack et al. 1995
}}
}}
|2={{clade
|label1="Solibacteres"
|1={{clade
|1=Bryobacter aggregatus Kulichevskaya et al. 2010
|2=Paludibaculum fermentans Kulichevskaya et al. 2014
}}
|label2=Acidobacteriaceae
|2={{clade
|1={{clade
|1=Acidobacterium capsulatum Kishimoto et al. 1991
|2={{clade
|1=Telmatobacter bradus Pankratov and Dedysh 2012
|label2=Acidicapsa
|2={{clade
|1=A. borealis Kulichevskaya et al. 2012 (type sp.)
|2=A. ligni Kulichevskaya et al. 2012
}}
}}
}}
|2={{clade
|1={{clade
|1=Bryocella elongata Dedysh et al. 2012
|label2=Edaphobacter
|2={{clade
|1=E. aggregans Koch et al. 2008 emend. Dedysh et al. 2012
|2=E. modestus Koch et al. 2008 (type sp.)
}}
}}
|2={{clade
|1="Granulicella" mallensis Männistö et al. 2012
|2={{clade
|label1=Terriglobus
|1={{clade
|1=T. aquaticus Baik et al. 2013
|2={{clade
|1=T. roseus Eichorst et al. 2007 (type sp.)
|2={{clade
|1=T. saanensis Männistö et al. 2011
|2=T. tenax Whang et al. 2014
}}
}}
}}
|label2=Granulicella
|2={{clade
|1={{clade
|1=G. cerasi Yamada et al. 2014
|2=G. paludicola Pankratov and Dedysh 2010 (type sp.)
}}
|2={{clade
|1=G. pectinivorans Pankratov and Dedysh 2010
|2={{clade
|1=G. sapmiensis Männistö et al. 2012
|2={{clade
|1=G. aggregans Pankratov and Dedysh 2010
|2={{clade
|1=G. tundricola Männistö et al. 2012
|2={{clade
|1=G. arctica Männistö et al. 2012
|2=G. rosea Pankratov and Dedysh 2010
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}Notes:â™  Strains found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature (LSPN)

References

{{Reflist|30em}}

External links

{{Extremophile}}{{Bacteria classification}}{{Taxonbar|from=Q41579}}


- content above as imported from Wikipedia
- "Acidobacteria" does not exist on GetWiki (yet)
- time: 1:56am EDT - Thu, Mar 21 2019
[ this remote article is provided by Wikipedia ]
LATEST EDITS [ see all ]
GETWIKI 09 MAY 2016
GETWIKI 18 OCT 2015
M.R.M. Parrott
Biographies
GETWIKI 20 AUG 2014
GETWIKI 19 AUG 2014
GETWIKI 18 AUG 2014
Wikinfo
Culture
CONNECT